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Research: Software

Below is a list of software arising from the SYSFLO project:

NarrowPeaks is a new R/Bioconductor package developed by SYSFLO fellow Pedro Madrigal with contributions from Pawel Krajewski. It is a tool aimed at splitting, shortening and filtering out transcription factor binding site candidates obtained after ChIP-seq peak calling. The package is publicly available at:
http://www.bioconductor.org/packages/release/bioc/html/NarrowPeaks.html

Sliderbio is a new method for prediction of motifs responsible for protein interactions and is available for download at www.ab.wur.nl/sliderbio.
The manuscript describing the method is published: F. Leal Valentim, F. Neven, P. Boyen and A.D.J. van Dijk, Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana. PLoS ONE 7 (10): e47022. doi:10.1371/journal.pone.0047022 more

 

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